Dashboard
Column
Screened (Target): 1318 (1500)
Enrolled (Target): 513 (609)
Average screened per month
137Average enrolled per month
43Column
Study Flow & Monthly Cascade (Cumulative Numbers), Updated on 2023-05-16
Daily trend of screening and enrollment
Monthly trend of screening and enrollment
Column
Follow-up status at enroll and follow-up visits (Cumulative Numbers)
Follow-up status by number of visits (Head count)
% of number of visits at each follow-up month
Study Data
Column
Characteristics
| HPV Result | ||
|---|---|---|---|
Characteristic | Total N = 12701 | Positive 526 (41.4)1 | Negative 744 (58.6)1 |
Study Strata | |||
FSW <30 HIV- | 459 (41.2) | 204 (44.3) | 255 (38.9) |
FSW <30 HIV+ | 33 (3.0) | 17 (3.7) | 16 (2.4) |
FSW 30+ HIV- | 475 (42.6) | 167 (36.3) | 308 (47.0) |
FSW 30+ HIV+ | 108 (9.7) | 55 (12.0) | 53 (8.1) |
MSM <30 HIV- | 25 (2.2) | 6 (1.3) | 19 (2.9) |
MSM <30 HIV+ | 8 (0.7) | 8 (1.7) | 0 (0.0) |
MSM 30+ HIV- | 4 (0.4) | 0 (0.0) | 4 (0.6) |
MSM 30+ HIV+ | 3 (0.3) | 3 (0.7) | 0 (0.0) |
Missing | 155 | 66 | 89 |
Age category | |||
<30 | 535 (47.4) | 242 (51.8) | 293 (44.3) |
30+ | 593 (52.6) | 225 (48.2) | 368 (55.7) |
Missing | 142 | 59 | 83 |
Gender Category | |||
FSW | 1,217 (96.1) | 502 (95.8) | 715 (96.2) |
MSM | 47 (3.7) | 20 (3.8) | 27 (3.6) |
Other | 1 (0.1) | 0 (0.0) | 1 (0.1) |
Prefer Not To Say | 2 (0.2) | 2 (0.4) | 0 (0.0) |
Missing | 3 | 2 | 1 |
HIV Status | |||
Negative | 1,092 (86.5) | 428 (81.8) | 664 (89.9) |
Positive | 170 (13.5) | 95 (18.2) | 75 (10.1) |
Missing | 8 | 3 | 5 |
1n (%) | |||
GeneXpert Results
Column
LTFU by months & visits
Missing AGE
Missing SEX
# A tibble: 3 × 2
pid sex
<chr> <chr>
1 TSH0708 <NA>
2 TSH0713 <NA>
3 TSH0762 <NA> Missing HIV Status
R Session Info
R version 4.2.2 (2022-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Ventura 13.3.1
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flexdashboard_0.6.1 glue_1.6.2 sjlabelled_1.2.0
[4] gtsummary_1.7.0 lubridate_1.9.2 forcats_1.0.0
[7] stringr_1.5.0 dplyr_1.1.1 purrr_1.0.1
[10] readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
[13] ggplot2_3.4.1.9000 tidyverse_1.3.2
loaded via a namespace (and not attached):
[1] googledrive_2.0.0 colorspace_2.1-0 ellipsis_0.3.2
[4] rio_0.5.29 rprojroot_2.0.3 snakecase_0.11.0
[7] flextable_0.8.5 base64enc_0.1-3 fs_1.6.1
[10] rstudioapi_0.14 httpcode_0.3.0 farver_2.1.1
[13] DT_0.27 fansi_1.0.4 xml2_1.3.3
[16] cachem_1.0.7 knitr_1.42 jsonlite_1.8.4
[19] gt_0.8.0 broom_1.0.4 dbplyr_2.3.0
[22] ggprism_1.0.4 shiny_1.7.4 compiler_4.2.2
[25] httr_1.4.4 backports_1.4.1 assertthat_0.2.1
[28] fastmap_1.1.1 lazyeval_0.2.2 gargle_1.3.0
[31] cli_3.6.1 later_1.3.0 htmltools_0.5.5
[34] tools_4.2.2 gtable_0.3.3 Rcpp_1.0.10
[37] cellranger_1.1.0 jquerylib_0.1.4 vctrs_0.6.1
[40] crul_1.3 broom.helpers_1.11.0 crosstalk_1.2.0
[43] insight_0.19.0 xfun_0.37 openxlsx_4.2.5.1
[46] rvest_1.0.3 timechange_0.2.0 mime_0.12
[49] lifecycle_1.0.3 googlesheets4_1.0.1 scales_1.2.1
[52] hms_1.1.2 promises_1.2.0.1 yaml_2.3.7
[55] curl_5.0.0 memoise_2.0.1 gdtools_0.3.0
[58] sass_0.4.5 stringi_1.7.12 highr_0.10
[61] zip_2.2.2 rlang_1.1.0.9000 pkgconfig_2.0.3
[64] systemfonts_1.0.4 evaluate_0.20 htmlwidgets_1.6.1
[67] labeling_0.4.2 tidyselect_1.2.0 here_1.0.1
[70] magrittr_2.0.3 R6_2.5.1 generics_0.1.3
[73] DBI_1.1.3 pillar_1.9.0 haven_2.5.1
[76] foreign_0.8-84 withr_2.5.0 janitor_2.2.0
[79] modelr_0.1.10 crayon_1.5.2 gfonts_0.2.0
[82] uuid_1.1-0 utf8_1.2.3 plotly_4.10.1
[85] tzdb_0.3.0 rmarkdown_2.20 officer_0.5.2
[88] grid_4.2.2 readxl_1.4.2 data.table_1.14.6
[91] reprex_2.0.2 digest_0.6.31 xtable_1.8-4
[94] httpuv_1.6.9 openssl_2.0.5 munsell_0.5.0
[97] viridisLite_0.4.1 bslib_0.4.2 askpass_1.1 package * version date (UTC) lib source
askpass 1.1 2019-01-13 [1] CRAN (R 4.2.0)
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.2.0)
backports 1.4.1 2021-12-13 [1] CRAN (R 4.2.0)
base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.2.0)
broom 1.0.4 2023-03-11 [1] CRAN (R 4.2.0)
broom.helpers 1.11.0 2023-01-06 [1] CRAN (R 4.2.0)
bslib 0.4.2 2022-12-16 [1] CRAN (R 4.2.0)
cachem 1.0.7 2023-02-24 [1] CRAN (R 4.2.0)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.2.0)
cli 3.6.1 2023-03-23 [1] CRAN (R 4.2.2)
colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.2.0)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.0)
crosstalk 1.2.0 2021-11-04 [1] CRAN (R 4.2.0)
crul 1.3 2022-09-03 [1] CRAN (R 4.2.0)
curl 5.0.0 2023-01-12 [1] CRAN (R 4.2.0)
data.table 1.14.6 2022-11-16 [1] CRAN (R 4.2.2)
DBI 1.1.3 2022-06-18 [1] CRAN (R 4.2.0)
dbplyr 2.3.0 2023-01-16 [1] CRAN (R 4.2.0)
digest 0.6.31 2022-12-11 [1] CRAN (R 4.2.0)
dplyr * 1.1.1 2023-03-22 [1] CRAN (R 4.2.0)
DT 0.27 2023-01-17 [1] CRAN (R 4.2.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.0)
evaluate 0.20 2023-01-17 [1] CRAN (R 4.2.0)
fansi 1.0.4 2023-01-22 [1] CRAN (R 4.2.0)
farver 2.1.1 2022-07-06 [1] CRAN (R 4.2.0)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.2.0)
flexdashboard * 0.6.1 2023-01-23 [1] CRAN (R 4.2.0)
flextable 0.8.5 2023-01-29 [1] CRAN (R 4.2.0)
forcats * 1.0.0 2023-01-29 [1] CRAN (R 4.2.0)
foreign 0.8-84 2022-12-06 [1] CRAN (R 4.2.0)
fs 1.6.1 2023-02-06 [1] CRAN (R 4.2.0)
gargle 1.3.0 2023-01-30 [1] CRAN (R 4.2.0)
gdtools 0.3.0 2023-01-15 [1] CRAN (R 4.2.0)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.2.0)
gfonts 0.2.0 2023-01-08 [1] CRAN (R 4.2.0)
ggplot2 * 3.4.1.9000 2023-03-23 [1] Github (tidyverse/ggplot2@1d1f795)
ggprism 1.0.4 2022-11-04 [1] CRAN (R 4.2.1)
glue * 1.6.2 2022-02-24 [1] CRAN (R 4.2.0)
googledrive 2.0.0 2021-07-08 [1] CRAN (R 4.2.0)
googlesheets4 1.0.1 2022-08-13 [1] CRAN (R 4.2.0)
gt 0.8.0 2022-11-16 [1] CRAN (R 4.2.2)
gtable 0.3.3 2023-03-21 [1] CRAN (R 4.2.0)
gtsummary * 1.7.0 2023-01-13 [1] CRAN (R 4.2.0)
haven 2.5.1 2022-08-22 [1] CRAN (R 4.2.0)
here 1.0.1 2020-12-13 [1] CRAN (R 4.2.0)
highr 0.10 2022-12-22 [1] CRAN (R 4.2.0)
hms 1.1.2 2022-08-19 [1] CRAN (R 4.2.0)
htmltools 0.5.5 2023-03-23 [1] CRAN (R 4.2.2)
htmlwidgets 1.6.1 2023-01-07 [1] CRAN (R 4.2.0)
httpcode 0.3.0 2020-04-10 [1] CRAN (R 4.2.0)
httpuv 1.6.9 2023-02-14 [1] CRAN (R 4.2.0)
httr 1.4.4 2022-08-17 [1] CRAN (R 4.2.0)
insight 0.19.0 2023-01-30 [1] CRAN (R 4.2.0)
janitor 2.2.0 2023-02-02 [1] CRAN (R 4.2.2)
jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.2.0)
jsonlite 1.8.4 2022-12-06 [1] CRAN (R 4.2.0)
knitr 1.42 2023-01-25 [1] CRAN (R 4.2.0)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.2.0)
later 1.3.0 2021-08-18 [1] CRAN (R 4.2.0)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.2.0)
lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.0)
lubridate * 1.9.2 2023-02-10 [1] CRAN (R 4.2.0)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.0)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.2.0)
modelr 0.1.10 2022-11-11 [1] CRAN (R 4.2.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.2.0)
officer 0.5.2 2023-01-27 [1] CRAN (R 4.2.0)
openssl 2.0.5 2022-12-06 [1] CRAN (R 4.2.0)
openxlsx 4.2.5.1 2022-10-24 [1] CRAN (R 4.2.0)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.2.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.0)
plotly 4.10.1 2022-11-07 [1] CRAN (R 4.2.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.2.0)
purrr * 1.0.1 2023-01-10 [1] CRAN (R 4.2.0)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.0)
Rcpp 1.0.10 2023-01-22 [1] CRAN (R 4.2.0)
readr * 2.1.4 2023-02-10 [1] CRAN (R 4.2.0)
readxl 1.4.2 2023-02-09 [1] CRAN (R 4.2.0)
reprex 2.0.2 2022-08-17 [1] CRAN (R 4.2.0)
rio 0.5.29 2021-11-22 [1] CRAN (R 4.2.0)
rlang 1.1.0.9000 2023-03-23 [1] Github (tidyverse/rlang@ea2fe5f)
rmarkdown 2.20 2023-01-19 [1] CRAN (R 4.2.0)
rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.2.0)
rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.2.0)
rvest 1.0.3 2022-08-19 [1] CRAN (R 4.2.0)
sass 0.4.5 2023-01-24 [1] CRAN (R 4.2.0)
scales 1.2.1 2022-08-20 [1] CRAN (R 4.2.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.0)
shiny 1.7.4 2022-12-15 [1] CRAN (R 4.2.2)
sjlabelled * 1.2.0 2022-04-10 [1] CRAN (R 4.2.0)
snakecase 0.11.0 2019-05-25 [1] CRAN (R 4.2.0)
stringi 1.7.12 2023-01-11 [1] CRAN (R 4.2.0)
stringr * 1.5.0 2022-12-02 [1] CRAN (R 4.2.2)
systemfonts 1.0.4 2022-02-11 [1] CRAN (R 4.2.0)
tibble * 3.2.1 2023-03-20 [1] CRAN (R 4.2.0)
tidyr * 1.3.0 2023-01-24 [1] CRAN (R 4.2.0)
tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.2.0)
tidyverse * 1.3.2 2022-07-18 [1] CRAN (R 4.2.0)
timechange 0.2.0 2023-01-11 [1] CRAN (R 4.2.0)
tzdb 0.3.0 2022-03-28 [1] CRAN (R 4.2.0)
utf8 1.2.3 2023-01-31 [1] CRAN (R 4.2.0)
uuid 1.1-0 2022-04-19 [1] CRAN (R 4.2.0)
vctrs 0.6.1 2023-03-22 [1] CRAN (R 4.2.0)
viridisLite 0.4.1 2022-08-22 [1] CRAN (R 4.2.0)
withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.0)
xfun 0.37 2023-01-31 [1] CRAN (R 4.2.0)
xml2 1.3.3 2021-11-30 [1] CRAN (R 4.2.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.0)
yaml 2.3.7 2023-01-23 [1] CRAN (R 4.2.0)
zip 2.2.2 2022-10-26 [1] CRAN (R 4.2.0)
[1] /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library